Saturday, September 15, 2012

Bacteria, Part of Us? Its Ubiquitous, Symbiotic & Competing Relationship With The Human Body

This article--the proposition it offers, the images it creates--may not be what you were seeking or expecting today. In fact, you might find it all unwelcome, and more than a little unsettling--maybe even repulsive. But from a physiological point of view, it is likely correct. And from a health and medical possibilities point of view, it offers real hope to many sufferers of disease or physiological dysfunction for whom medical science has had no answers. From the always informative Science and Technology section of The Economist:
 
People are not just people. They are an awful lot of microbes, too.
 
[I]n the nooks and crannies of every human being, and especially in his or her guts, dwells the microbiome: 100 trillion bacteria of several hundred species bearing 3 million non-human genes. [B]iological [revolutionaries] believe these should count, too; that humans are not single organisms, but superorganisms made up of lots of smaller organisms working together.
 
It might sound perverse to claim bacterial cells and genes as part of the body, but the revolutionary case is a good one. They are, rather, fully paid-up members of a community of which the human “host” is but a single (if dominating) member. This view is increasingly popular: the world’s leading scientific journals, Nature and Science, have both reviewed it extensively in recent months. It is also important: it will help the science and practice of medicine (see the more detailed Economist article linked below).
 
All in this together
 
The microbiome does many jobs in exchange for the raw materials and shelter its host provides. One is to feed people more than 10% of their daily calories. These are derived from plant carbohydrates that human enzymes are unable to break down. And not just plant carbohydrates. Mother’s milk contains carbohydrates called glycans which human enzymes cannot digest, but bacterial ones can. This alone shows how closely host and microbiome have co-evolved over the years. But digestion is not the only nutritional service provided. The microbiome also makes vitamins, notably B2, B12 and folic acid. It is, moreover, capable of adjusting its output to its host’s needs and diet. The microbiomes of babies make more folic acid than do those of adults. And microbiomes in vitamin-hungry places like Malawi and rural Venezuela turn out more of these chemicals than do those in the guts of North Americans.
 
The microbiome also maintains the host’s health by keeping hostile interlopers at bay. An alien bug that causes diarrhea, for instance, is as much an enemy of the microbiome as of the host. Both have an interest in zapping it. And both contribute to the task. Host and microbiome, then, are allies. But there is more to it than that. For the latest research shows their physiologies are linked in ways which make the idea of a human superorganism more than just a rhetorical flourish.
 
These links are most visible when they go wrong. A disrupted microbiome has been associated with a lengthening list of problems: obesity and its opposite, malnutrition; diabetes (both type-1 and type-2); atherosclerosis and heart disease; multiple sclerosis; asthma and eczema; liver disease; numerous diseases of the intestines, including bowel cancer; and autism. The details are often obscure, but in some cases it looks as if bugs are making molecules that help regulate the activities of human cells. If these signals go wrong, disease is the consequence. This matters because it suggests doctors have been looking in the wrong place for explanations of these diseases. It also suggests a whole new avenue for treatment. If an upset microbiome causes illness, settling it down might effect a cure.
 
[…]Two other areas look promising. One is more sophisticated deployment of the humble antibiotic, arguably the pharma industry’s most effective invention. At the moment antibiotics are used mainly to kill infections. In the future they might have a more subtle use—to manipulate the mix of bugs within a human, so that good bugs spread at the expense of bad ones.
 
The other field that may be changed is genetics. Many of the diseases in which the microbiome is implicated seem to run in families. In some, such as heart disease, that is partly explained by known human genes. In a lot, though, most notably autism, the genetic link is obscure. This may be because geneticists have been looking at the wrong set of genes—the 23,000 rather than the 3m. For those 3m are still inherited. They are largely picked up from your mother during the messy process of birth. Though no clear example is yet known, it is possible that particular disease-inducing strains are being passed down the generations in this way.
 
As with all such upheavals, it is unclear where the microbiome revolution will end up. Doctors and biologists may truly come to think of people as superorganisms. Then again, they may not. What is clear, though, is that turning thinking inside out in this way is yielding new insights into seemingly intractable medical problems, and there is a good chance cures will follow.
 
---“Microbes maketh man,” The Economist, Leaders section (8.18.2012)
 
In the same edition of The Economist is broader, more detailed article on the same topic: “The Human Microbiome: Me, Myself, Us.” It is worth the read.
 
 
Back-up links:
 

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